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    12 videos · 5 hr 40 min
    Playlists

    Biology for Programmers

    Curated by HackerTube · 12 videos · 5 hr 40 min

    HN commenters keep finding biology through computing: Sussman's talk on how we don't know how to compute, Levin's NeurIPS talk, a DEF CON talk on hacking the genome. This playlist starts with that framing, shows you the molecular machinery in animation, moves to Levin's idea that tissues compute shape, then to security, static analysis and DIY gene therapy, and ends with the Lisp hacker designing molecules.

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    1. 1
      1:04:19

      "We Really Don't Know How to Compute!" - Gerald Sussman (2011)

      Strange Loop Conference · 96K views · 5 years ago

      The framing: Sussman sets biology's robustness against how brittle our programs are, and one commenter says it made them question what programming is.

    2. 2
      9:09

      Animations of unseeable biology | Drew Berry | TED

      TED · 2.7M views · 14 years ago

      Now look at the hardware: Drew Berry's accurate animations of DNA replication, which left one commenter in awe of the trillions of protein machines inside us.

    3. 3
      7:20

      DNA animation (2002-2014) by Drew Berry and Etsuko Uno wehi.tv #ScienceArt

      WEHImovies · 7.3M views · 8 years ago

      Seven minutes of the same molecular machinery with no narration, jostling and mechanical, and the clip HN posts most often to show it.

    4. 4
      3:04

      mRNA Translation (Advanced)

      DNA Learning Center · 1.5M views · 16 years ago

      Three minutes on the ribosome reading codons and assembling a protein, the clip HN posted widely in the mRNA-vaccine threads.

    5. 5
      7:45

      Electron transport chain

      Harvard Online · 3.7M views · 9 years ago

      The power supply: proton pumps and ATP synthase as an actual rotary motor, which commenters share as the clearest example of nanomachines in cells.

    6. 6
      1:55

      The Evolution of Bacteria on a “Mega-Plate” Petri Dish (Kishony Lab)

      Harvard Medical School · 3M views · 10 years ago

      Evolution as a search algorithm you can watch, as bacteria work their way across rising antibiotic doses in days.

    7. 7
      19:41

      Michael Levin: The electrical blueprints that orchestrate life | TED

      TED · 576K views · 5 years ago

      Up from molecules to tissues: Levin's 20-minute introduction to the bioelectric layer, with two-headed worms and xenobots.

    8. 8
      52:07

      What Bodies Think About: Bioelectric Computation Outside the Nervous System - NeurIPS 2018

      The Artificial Intelligence Channel · 103K views · 7 years ago

      The full version given to an ML audience, and the talk that introduced many HN readers to Levin's view of cell collectives as computers that store pattern memories.

    9. 9
      49:47

      DEF CON 25 - John Sotos - Genetic Diseases to Guide Digital Hacks of the Human Genome

      DEFCONConference · 14K views · 9 years ago

      The security engineer's view: genetic diseases as known exploits, a talk that convinced several commenters to keep their DNA out of databases.

    10. 10
      48:36

      Matt Might - Winning the War on Error Solving the Halting Problem and Curing Cancer

      Curry On! · 8.9K views · 9 years ago

      Static analysis and precision medicine in one talk, built on Might's search for his son's diagnosis, which commenters call a must-see.

    11. 11
      18:33

      I Genetically Engineered *MYSELF* to Fix Lactose Intolerance

      The Thought Emporium · 640K views · 8 years ago

      Biology as a garage hack: a home-made AAV gene therapy tested on the host himself, the example HN keeps citing in biohacking threads.

    12. 12
      57:38

      Clasp: Common Lisp using LLVM and C++ for Molecular Metaprogramming

      Google TechTalks · 52K views · 11 years ago

      The closer: a chemist writes his own Lisp compiler to design molecules, and commenters dare anyone to watch it and not be impressed.